publications

Publications reversed chronological order.

2024

  1. linbipaper.png
    A nasal chemosensation–dependent critical window for somatosensory development
    Linbi Cai, Ali Özgür Argunşah, Angeliki Damilou, and Theofanis Karayannis
    Science, 2024
    DOI
  2. angelikipaper.png
    Developmental Cajal-Retzius cell death contributes to the maturation of layer 1 cortical inhibition and somatosensory processing
    Angeliki Damilou, Linbi Cai, Ali Özgür Argunşah, Shuting Han, George Kanatouris, Maria Karatsoli, Olivia Hanley, Lorenzo Gesuita, Sepp Kollmorgen, Fritjof Helmchen, and  others
    Nature Communications, 2024
    DOI
  3. barrelsepta.png
    Progressive engagement of SST+ interneurons via Elfn1 regulates the barrel-septa response identity in the somatosensory cortex of mice
    Ali Özgür Argunşah, Tevye Jason Stachniak, Jenq-Wei Yang, Linbi Cai, George Kanatouris, and Theofanis Karayannis
    bioRxiv, 2024
    DOI

2023

  1. nst.png
    The temporal pattern of synaptic activation determines the longevity of structural plasticity at dendritic spines
    Ali Özgür Argunşah, and Inbal Israely
    Iscience, 2023
    DOI
  2. homeo.png
    Homosynaptic plasticity induction causes heterosynaptic changes at the unstimulated neighbors in an induction pattern and location-specific manner
    Ali Özgür Argunşah, and Inbal Israely
    Frontiers in Cellular Neuroscience, 2023
    DOI
  3. kainate.png
    Presynaptic kainate receptors onto somatostatin interneurons are recruited by activity throughout development and contribute to cortical sensory adaptation
    Tevye J Stachniak, Ali Özgür Argunşah, Jenq-Wei Yang, Linbi Cai, and Theofanis Karayannis
    Journal of Neuroscience, 2023
    DOI

2022

  1. spines.png
    An interactive time series image analysis software for dendritic spines
    Ali Özgür Argunşah, Ertunç Erdil, Muhammad Usman Ghani, Yazmı́n Ramiro-Cortés, Anna F Hobbiss, Theofanis Karayannis, Müjdat Çetin, Inbal Israely, and Devrim Ünay
    Scientific reports, 2022
    DOI
  2. microglia.png
    Microglia contribute to the postnatal development of cortical somatostatin-positive inhibitory cells and to whisker-evoked cortical activity
    Lorenzo Gesuita, Anna Cavaccini, Ali Özgür Argunşah, Emilia Favuzzi, Leena Ali Ibrahim, Tevye Jason Stachniak, Martina De Gennaro, Sebastian Utz, Melanie Greter, and Theofanis Karayannis
    Cell Reports, 2022
    DOI
  3. star.png
    Sparse postnatal labeling and quantification of superficial cortical cell synapses in the mouse neocortex
    Lorenzo Gesuita, Ali Özgür Argunşah, and Theofanis Karayannis
    STAR protocols, 2022
    DOI
  4. superresolution.png
    Enhancing Two-Photon Images for Anatomical Visualisation using Super-Resolution
    Burhan Aydeniz, Safa Can Metin, Mehmet Turkan, Devrim Unay, Theofanis Karayannis, and Ali Özgür Argunsah
    In 2022 Medical Technologies Congress (TIPTEKNO), 2022
    DOI

2021

  1. postmit.png
    Postmitotic Prox1 expression controls the final specification of cortical VIP interneuron subtypes
    Tevye Jason Stachniak, Rahel Kastli, Olivia Hanley, Ali Özgür Argunşah, Elianne Grietje Theodora Valk, George Kanatouris, and Theofanis Karayannis
    Journal of Neuroscience, 2021
    DOI

2020

  1. vipsst.png
    Developmental divergence of sensory stimulus representation in cortical interneurons
    Rahel Kastli, Rasmus Vighagen, Alexander Bourg, Ali Özgür Argunşah, Asim Iqbal, Fabian F Voigt, Daniel Kirschenbaum, Adriano Aguzzi, Fritjof Helmchen, and Theofanis Karayannis
    Nature communications, 2020
    DOI

2019

  1. context.png
    Combining nonparametric spatial context priors with nonparametric shape priors for dendritic spine segmentation in 2-photon microscopy images
    Ertunc Erdil, Ali Özgür Argunşah, Tolga Tasdizen, Devrim Unay, and Mujdat Cetin
    In 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019), 2019
    DOI

2018

  1. tracking.png
    Tracking-assisted detection of dendritic spines in time-lapse microscopic images
    Lavdie Rada, Bike Kilic, Ertunc Erdil, Yazmı́n Ramiro-Cortés, Inbal Israely, Devrim Unay, Mujdat Cetin, and Ali Özgür Argunşah
    Neuroscience, 2018
    DOI

2017

  1. nonparametric.png
    Nonparametric joint shape and feature priors for image segmentation
    Ertunc Erdil, Muhammad Usman Ghani, Lavdie Rada, Ali Özgür Argunşah, Devrim Unay, Tolga Tasdizen, and Mujdat Cetin
    IEEE Transactions on Image Processing, 2017
    DOI
  2. appearance.png
    Dendritic spine classification using shape and appearance features based on two-photon microscopy
    Muhammad Usman Ghani, Fitsum Mesadi, Sümeyra Demir Kanık, Ali Özgür Argunşah, Anna Felicity Hobbiss, Inbal Israely, Devrim Ünay, Tolga Taşdizen, and Müjdat Çetin
    Journal of neuroscience methods, 2017
    DOI

2016

  1. manifold.png
    On comparison of manifold learning techniques for dendritic spine classification
    Muhammad Usman Ghani, Ali Özgür Argunşah, Inbal Israely, Devrim Ünay, Tolga Taşdizen, and Müjdat Çetin
    In 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI), 2016
    DOI

2015

  1. joint.png
    A joint classification and segmentation approach for dendritic spine segmentation in 2-photon microscopy images
    Ertunc Erdil, Ali Özgür Argunşah, Tolga Tasdizen, Devrim Unay, and Mujdat Cetin
    In 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI), 2015
    DOI

2014

  1. dot.png
    Automatic dendritic spine detection using multiscale dot enhancement filters and sift features
    Lavdie Rada, Ertunc Erdil, Ali Özgür Argunşah, Devrim Unay, and Mujdat Cetin
    In 2014 IEEE International Conference on Image Processing (ICIP), 2014
    DOI

2010

  1. arpcahmm.png
    AR-PCA-HMM approach for sensorimotor task classification in EEG-based brain-computer interfaces
    Ali Özgür Argunşah, and Müjdat Cetin
    In 2010 20th International Conference on Pattern Recognition, 2010
    DOI

2007

  1. eog.png
    A human-computer interface (HCI) based on electrooculogram (EOG) for handicapped
    Batu Akan, and Ali Özgür Argunşah
    In 2007 IEEE 15th Signal Processing and Communications Applications, 2007
    DOI